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Publication Year: 2024

61 to 70 of 12,887 Results

01_MicroRNA_Sequencing_Analysis.sh Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Shell Script - 15.8 KB - MD5: 22021ee54507706369dc3d6cdbd6aa37 This script outlines a bioinformatics pipeline for processing and analyzing RNA sequencing data of microRNAs (miRNAs) in ruddy turnstones, including quality checks, adapter trimming, read filtering, mapping, feature counting, and differential expression analysis.
02_Coding_Article_Figures.sh Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Shell Script - 11.8 KB - MD5: 8bbcdacd6282b43e7fb84f2b334ced7a This file contains the scripts used for generating the manuscript figures.
03_ain_miRNAome.fasta Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Unknown - 11.1 KB - MD5: e2e6979324cad6a6a36b9f6db2da5186 This file contains mature microRNA (miRNA) sequences from ruddy turnstones (Arenaria interpres). Each sequence represents a different miRNA arm, either the 3' or 5' arm, and is associated with a specific miRNA family. The file is formatted in FASTA, where each sequence is precede...
04_Fastqc_Sequence_Length_Distribution_Plot.tsv Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Tab-Separated Values - 950 B - MD5: e22ffa9f0bd5b201e7f44fc47236a1fd This file, extracted from the MultiQC report, summarizes the sequence length distribution of the clean small RNA-seq reads for each sample after FastQC quality assessment. This file was used to generate Figure 2 of the manuscript, which visually presents the distribution of read...
05_FeatureCounts.tsv Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Tab-Separated Values - 16.2 KB - MD5: 40b85de1570e294e23c1fdbc684693ab This file, generated from the featureCounts function, contains miRNA counts, derived from a set of BAM files. The file provides raw counts for each miRNA feature, with each row corresponding to a unique miRNA ID, and each column representing a sample.
06_eff.RTS.csv Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Comma Separated Values - 126 B - MD5: 71effd58adb72e5422c6fa53645795e2 This file contains amplification efficiencies for each miRNA target. These efficiencies, which represent the amplification factor per PCR cycle, are essential for accurate data normalization in qPCR analysis.
07_mcmc.RTS.csv Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres) Comma Separated Values - 3.8 KB - MD5: 5154bb6addd43c76c6e4350f4d6280db This file contains qPCR data and metadata for each sample, including the bird's sex, age, and AIV infection status, for use with the mcmc.qpcr package.
Extended data for: Impact of sub-basalt thrust systems on the Faroe continental shelf for the late Paleoproterozoic–Cenozoic tectonic evolution of the margin Dec 10, 2024 - University of Oslo Koehl, Jean-Baptiste P., 2024, "Extended data for: Impact of sub-basalt thrust systems on the Faroe continental shelf for the late Paleoproterozoic–Cenozoic tectonic evolution of the margin", https://doi.org/10.18710/780M9P, DataverseNO, V1 High-resolution version of the seismic reflection data off the Faroe Islands from TGS presented in "Impact of sub-basalt thrust systems on the Faroe continental shelf for the late Paleoproterozoic–Cenozoic tectonic evolution of the margin". The data were acquired by Western Geoph...
00_ReadMe.txt Dec 10, 2024 - Extended data for: Impact of sub-basalt thrust systems on the Faroe continental shelf for the late Paleoproterozoic–Cenozoic tectonic evolution of the margin Plain Text - 10.9 KB - MD5: e31b6a797270dd83b004e0d2ad19281a ReadMe file.
Figure_2a.jpg Dec 10, 2024 - Extended data for: Impact of sub-basalt thrust systems on the Faroe continental shelf for the late Paleoproterozoic–Cenozoic tectonic evolution of the margin JPEG Image - 120.5 MB - MD5: caac87bbeb69feafdde319110482f02c High-resolution version of Figure 2a.

01_MicroRNA_Sequencing_Analysis.sh

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Shell Script - 15.8 KB -

This script outlines a bioinformatics pipeline for processing and analyzing RNA sequencing data of microRNAs (miRNAs) in ruddy turnstones, including quality checks, adapter trimming, read filtering, mapping, feature counting, and differential expression analysis.

02_Coding_Article_Figures.sh

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Shell Script - 11.8 KB -

This file contains the scripts used for generating the manuscript figures.

03_ain_miRNAome.fasta

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Unknown - 11.1 KB -

This file contains mature microRNA (miRNA) sequences from ruddy turnstones (Arenaria interpres). Each sequence represents a different miRNA arm, either the 3' or 5' arm, and is associated with a specific miRNA family. The file is formatted in FASTA, where each sequence is precede...

04_Fastqc_Sequence_Length_Distribution_Plot.tsv

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Tab-Separated Values - 950 B -

This file, extracted from the MultiQC report, summarizes the sequence length distribution of the clean small RNA-seq reads for each sample after FastQC quality assessment. This file was used to generate Figure 2 of the manuscript, which visually presents the distribution of read...

05_FeatureCounts.tsv

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Tab-Separated Values - 16.2 KB -

This file, generated from the featureCounts function, contains miRNA counts, derived from a set of BAM files. The file provides raw counts for each miRNA feature, with each row corresponding to a unique miRNA ID, and each column representing a sample.

06_eff.RTS.csv

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Comma Separated Values - 126 B -

This file contains amplification efficiencies for each miRNA target. These efficiencies, which represent the amplification factor per PCR cycle, are essential for accurate data normalization in qPCR analysis.

07_mcmc.RTS.csv

Dec 12, 2024 - Replication Data for: Circulating miRNAome of avian influenza-infected ruddy turnstones (Arenaria interpres)

Comma Separated Values - 3.8 KB -

This file contains qPCR data and metadata for each sample, including the bird's sex, age, and AIV infection status, for use with the mcmc.qpcr package.

Extended data for: Impact of sub-basalt thrust systems on the Faroe continental shelf for the late Paleoproterozoic–Cenozoic tectonic evolution of the margin

Dec 10, 2024 - University of Oslo

Koehl, Jean-Baptiste P., 2024, "Extended data for: Impact of sub-basalt thrust systems on the Faroe continental shelf for the late Paleoproterozoic–Cenozoic tectonic evolution of the margin", https://doi.org/10.18710/780M9P, DataverseNO, V1

High-resolution version of the seismic reflection data off the Faroe Islands from TGS presented in "Impact of sub-basalt thrust systems on the Faroe continental shelf for the late Paleoproterozoic–Cenozoic tectonic evolution of the margin". The data were acquired by Western Geoph...

00_ReadMe.txt

Dec 10, 2024 - Extended data for: Impact of sub-basalt thrust systems on the Faroe continental shelf for the late Paleoproterozoic–Cenozoic tectonic evolution of the margin

Plain Text - 10.9 KB -

ReadMe file.

Figure_2a.jpg

Dec 10, 2024 - Extended data for: Impact of sub-basalt thrust systems on the Faroe continental shelf for the late Paleoproterozoic–Cenozoic tectonic evolution of the margin

JPEG Image - 120.5 MB -

High-resolution version of Figure 2a.

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